Table:
The selectors for the DayMatrix structured type.
Selector |
Description |
FixedDel |
Adjusted deletion penalty |
IncDel |
Deletion penalty increment |
MaxOffDiag |
Max. value not on the diagonal. |
MaxSim |
Max. value in the Dayhoff matrix. |
MinSim |
Min. value in the Dayhoff matrix. |
PamNumber |
PAM distance for which this |
|
matrix was computed. |
Sim, i, j |
The similarity score for amino |
|
acid i and amino acid j. |
type |
The type of the Dayhoff matrix. |
|
ie. Peptide, DNA. |