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The Reference Guide

Programming Tools and Functions
- ASCII to Integer
- Assignment
- Enumerate
- Check Assignment
- Error Messages
- Expression Evaluation
- Boolean Evaluation
- Short if-then-fi
- Lowercase
- Names
- Delay Evaluation
- Return
- Specify Unevaluated
- Trace
- Trapping Errors
- Types Checking
- Uppercase
Sets, Lists, Arrays and Strings
- Append
- Object Copy
- Length of an Object
- Operator
- Sorting
- Union
- Subset
- Intersect
- Member
- Minus
Searching Functions
- Approximate string Search
- Best String Match
- Ordered Searches
- Searching Arrays
- Searching Sequence Databases
- Searching for SGML Tags
- Case Sensitive Search string
- Case Insensitive Search string
Graphic Functions
- Plot a Distribution
- Create Dot Plot
- Plot
- ViewPlot
- DrawPlot
Statistical Functions
Randomization Functions
Mathematical Functions
- The Absolute Value Function
- The Arc-tangent Function
- The Cosine Function
- The Error Function
- The Complimentary Error Function
- The Inverse Complementary Error Function
- The Exponential Function
- The Factorial Function
- The Floor Function
- Gaussian Elimination
- The Natural Logarithm Function
- The Logarithm base 10 Function
- The Maximum Function
- Maximize Function
- The Minimum Function
- Minimize Function
- Minimize2D Function
- DisconMinimize Function
- The Modulus Function
- The Rounding Function
- The Sine Function
- The Square Root Function
- Summation
- The Tangent Function
- Matrix Transposition
- The Truncate Function
- The Riemann Zeta Function
- The Zip Function
Printing Routines
- Linear Print
- Pretty Print
- Format Print
- Pretty Print a Square Matrix
- Print Information about a Procedure
- String Format Scan
- String Print
Input and Output Functions
- Appending to a File
- File Pointer Offset
- Find Key
- Load a Library Function
- Loading a Genetic Database
- Read Lines
- readpipe
- OpenPipe
- ReadLine
- ReadOffsetLine
- Store Key
- Write to a File
Nucleic, Amino Acid and Genetic Code Functions
- Nucleic Acids
- Amino Acids
- Standard Genetic Code
Dayhoff and Mutation Matrix Functions
- Dayhoff (Original) Calculation
- Dayhoff (Enhanced) Matrices
- Search for a Dayhoff Matrix
Nucleic Peptide Matching Functions
Pairwise Matching Functions
- Backwards Dynamic Programming
- Dynamic Programming
All against All Functions
Graph and Tree Functions
Tree Construction Functions
- Bisection Tree
Multiple Sequence Alignment and Probabilistic Ancestral Sequence Functions
Secondary Structure Prediction Functions
Enzyme Digestion Functions
System Functions and Variables
- Date
- DPU Time
- Get Process Identification
- Garbage Collection
- help
- Hostname
- Running Time
- Set
- Sleep
- System commands
- TimedCallSystem
- Time
HTML Functions
Interprocessor Functions
External Function Call Functions
Types, Operators and Expressions
- Simple Data Types
- Relational and Logical Operators
- The Order of Operations
Error Messages

Gaston Gonnet
1998-09-15